PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0959s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Nin-like
Protein Properties Length: 322aa    MW: 35897.4 Da    PI: 5.2765
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0959s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.46.7e-24135182552
               RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ++ e ls+yF+lpi++AA+eL+++lT+ K++CR++G++RWPhRk+ s+
  Kalax.0959s0012.1.p 135 LTWEILSQYFYLPIAQAARELNIGLTLFKKRCRELGVRRWPHRKLMSI 182
                          78999****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.337111203IPR003035RWP-RK domain
PfamPF020423.9E-20135182IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDYGLDKDNF LHAPFQPTDS SFLAMSAASS EPLDYYSDVG LQSLLEFQYE SLLLPAAADD  60
SVKMVDGESD QYDSPYASFN VTGHHLLDDS LVFERGGLSM DSNVAETELG QKGSKAKRGR  120
RRCSASVNNF AAELLTWEIL SQYFYLPIAQ AARELNIGLT LFKKRCRELG VRRWPHRKLM  180
SIKSLIKNVQ EMEKESNPAV SKETVRSAVQ VLEGQMKMME VMPDVQLEAQ TKRLRQACFK  240
ANYKKRRLMI MNGLTNSAGS ASSSSSSSQG RYSTSSSSVN HVSSMSRTEA IEQDFEDSEE  300
LKSLLFDSLS PSECTFLNDF I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.16e-45RWP-RK domain-containing protein