PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0964s0008.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 491aa    MW: 55588.2 Da    PI: 9.1032
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0964s0008.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.6e-08468490326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          + +C +fa+ G C++G++CkF+Hg
  Kalax.0964s0008.2.p 468 RQPCWYFAE-GRCRFGSNCKFSHG 490
                          67999****.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689061.03E-7105150No hitNo description
Gene3DG3DSA:1.10.720.301.6E-8106150IPR003034SAP domain
SMARTSM005130.0015116150IPR003034SAP domain
PfamPF020371.8E-8116150IPR003034SAP domain
PROSITE profilePS5080010.126116150IPR003034SAP domain
PROSITE profilePS5010316.173466490IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5467490IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5468490IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4470490IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAFAEHWGAD RRPDGVVDGE DGDTERDFTE EEDSDLSVSD DSVDDPTFNE LEETMSGLSK  60
LSVQKKKASS SSSSARRLES ELVEAVDMDV GDDELLEEVD RNSFEAVEGL IRGGKLEKLK  120
IEQCKVYLRK YGLRLTGNKE TLIQRISEHI RILNGGGERE YPAYSFVLNC KGDACMGDVV  180
MFEQKVYAAY DLAARSGPPI GTRVIAGRIV KESYGAAKQQ HTFTIEVLWS RGEKPLPPLH  240
PILIKGRNLY KMKTLRQRWE DETLREQALR DKHLRGAAAR TDREMRIREK KMRRELRAKR  300
VPRTDKYDKD HAPPILPQNN KKKHPLAAHD NQAMNQPDAT ESRNIMGQQR NQSAPQQKSQ  360
VQYSGMDSTH HPHNRSVRGR GPAHGGFENE NSRLHPGSFQ NVHNQQNGTT EVMRRYHGAA  420
RRPLAAHAHQ PPLSSRENIE CPARPFSPPA GPRFSQQVRG NHHQHPPRQP CWYFAEGRCR  480
FGSNCKFSHG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-