PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0990s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 191aa    MW: 21025.5 Da    PI: 10.3896
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0990s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-0545761854
                         HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         ++++ L++l+ +      +K + a++L++A+eYI+ L
  Kalax.0990s0011.1.p 45 ERIAALQQLVSPY-----GKTDTASVLTEAMEYIQFL 76
                         6899999999998.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.0392776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-92996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-113292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.91E-53881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MMEHKRSLSS SSSSVNPVCL TSIPPKRHKP HLSISTKEKK DKFGERIAAL QQLVSPYGKT  60
DTASVLTEAM EYIQFLHDQV KVLSAPYLQS TQPVKMQKYE AYNMRSRGLC LVPVSCTVGV  120
ASSNGADIWA PIKSTSPRSV TGPSLKPTIG ESFLGFGPGC SVPAIRKKNR RYFLKKEKET  180
SIPIPIIRWC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021654519.11e-65transcription factor bHLH153-like
RefseqXP_021907053.12e-65transcription factor bHLH153
SwissprotQ7XJU23e-53BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2R6S0E01e-63A0A2R6S0E0_ACTCH; Transcription factor bHLH113 like
STRINGevm.model.supercontig_9.3636e-65(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.55e-55bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]