PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0991s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27245 Da    PI: 9.8521
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0991s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.9e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvt+skRrng++KKAeEL vLCda+v+vi++sst+k++ey+s
  Kalax.0991s0008.1.p  9 KRIENTTNRQVTYSKRRNGLFKKAEELTVLCDAKVSVIMISSTQKIHEYIS 59
                         79***********************************************86 PP
2K-box90.72.7e-3071168198
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          yqk+s+++++++++e++q+ l+k+k++++ L++e+R+++Ge+L++Ls++eL+ Leq+++++ + iR++K++ + + +++l+kk ++++e+
  Kalax.0991s0008.1.p  71 YQKASNTDVWSKQYERMQETLRKVKEKNKRLRTEIRQRMGECLNDLSFEELRGLEQDMDNAATAIRARKYKAIGSRTDTLRKKVRNVEEI 160
                          8999************************************************************************************** PP

                K-box  91 nkaLrkkl 98 
                           ++L+++l
  Kalax.0991s0008.1.p 161 YRKLNQEL 168
                          ****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.712161IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.38E-37280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-34395IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-263859IPR002100Transcription factor, MADS-box
PfamPF014867.9E-2081168IPR002487Transcription factor, K-box
PROSITE profilePS5129715.02184174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KAEELTVLCD AKVSVIMISS TQKIHEYISP  60
GITTKQVVDL YQKASNTDVW SKQYERMQET LRKVKEKNKR LRTEIRQRMG ECLNDLSFEE  120
LRGLEQDMDN AATAIRARKY KAIGSRTDTL RKKVRNVEEI YRKLNQELVC PQPNFEFARE  180
AREEDRHYGL VDNSGDYESV IALGPRVFAL HLNPNQSANM QSCGGSDLTY TLMSGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-14162162MEF2C
5f28_B2e-14162162MEF2C
5f28_C2e-14162162MEF2C
5f28_D2e-14162162MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4793580.0DQ479358.1 Kalanchoe blossfeldiana APETALA3-like protein (AP3-2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612346.17e-97floral homeotic protein DEFICIENS
SwissprotP237068e-98DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLQ1HLD91e-146Q1HLD9_KALBL; APETALA3-like protein (Fragment)
STRINGcassava4.1_015343m3e-96(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-86MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]