PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0998s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 790aa    MW: 86599.8 Da    PI: 6.7061
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0998s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.47.9e-15502541241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          e+++C+Ck+s+Clk+YCeCf ag++C+ +C+C++C+Nk e
  Kalax.0998s0004.1.p 502 ECRRCSCKRSRCLKLYCECFVAGAYCAGSCSCQGCSNKPE 541
                          6899*********************************975 PP
2TCR50.83.3e-16590627340
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN+ 
  Kalax.0998s0004.1.p 590 KRGCNCKKSMCLKKYCECYQANVGCSDGCRCEGCKNTF 627
                          78**********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.9E-13501542IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.3502628IPR005172CRC domain
PfamPF036381.2E-10504539IPR005172CRC domain
SMARTSM011141.3E-17588629IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.1E-12590626IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MDPDPAAAPA VPPAGAAELE SADVRDSAVF DYISNLSPLQ PEQPPNLAKK FTGLPSSTAA  60
FTSPQPNKGN KTSFGTRPQH SQFTVADEST FDIPVQPQFP SESARLINGV NSSDNNSGSD  120
VTLQAQPLLS FDSVDGCSDP QEEMDSSILH PADKTEADDE PKSVQSVTCT LSNSNNLLNA  180
LKDFMAEVNK DLDHSNFPEE TRLDLTKKHE INCELVQNEH LYQHGDITSD SAHMHADLYH  240
QSREPIVNQN EDTKCHGFSG QLGHESLSGL QVFNNSHENP TKFVNKPMRK LMLSDFKASD  300
KRRGMLRRCL QFENSMDCPK SQHSKMSGSN LQQFPVSTTP KLTMDRYQSS GSSFSSQAGK  360
SPTINILKGK GIGLHLNSLV RTLPPAPASA PDHKEMHDAS IKPLILANVK QTQLTQGETK  420
IFKGVVSQSV NMIHGNEGSA DIMSNCLSSH GANGFLLNKA KRTESESRLG KRKLRSVQHD  480
SFDNLNESRS KRERTESFAT GECRRCSCKR SRCLKLYCEC FVAGAYCAGS CSCQGCSNKP  540
EFEEIVSETR NLILSRNPLA FSSKVEETVS ESLPNNVNII QLAPSAPRLK RGCNCKKSMC  600
LKKYCECYQA NVGCSDGCRC EGCKNTFGRK AGCGHDDSQK RSLSRHVQEF EGACDENMEV  660
CTMKTIITQT DFSNLQYHEL VTPSLHPPEH CVSVPLSGHL SLGSLSSPDS CMIPCNDKVL  720
KPPPTALHDM LLTSSTSSSH QISYEWESDT NSSEKATNLQ PSYDADKYCQ SRNTSPAQFV  780
KSKDFLPLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1350662514120Protein lin-54 homolog
5fd3_B3e-1350662514120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-37TESMIN/TSO1-like CXC 2