PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0998s0004.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 753aa    MW: 82767.7 Da    PI: 7.1861
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0998s0004.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.57.4e-15467506241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          e+++C+Ck+s+Clk+YCeCf ag++C+ +C+C++C+Nk e
  Kalax.0998s0004.4.p 467 ECRRCSCKRSRCLKLYCECFVAGAYCAGSCSCQGCSNKPE 506
                          6899*********************************975 PP
2TCR50.93.1e-16555592340
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN+ 
  Kalax.0998s0004.4.p 555 KRGCNCKKSMCLKKYCECYQANVGCSDGCRCEGCKNTF 592
                          78**********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.9E-13466507IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.3467593IPR005172CRC domain
PfamPF036381.1E-10469504IPR005172CRC domain
SMARTSM011141.3E-17553594IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.6E-12555591IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MDPDPAAAPA VPPAGAAELE SADVRDSAVF DYISNLSPLQ PEQPPNLAKK FTGLPSSTAA  60
FTSPQPNKGN KTSFGTRPQH SQFTVADEST FDIPVQPQFP SESARLINGV NSSDNNSDKT  120
EADDEPKSVQ SVTCTLSNSN NLLNALKDFM AEVNKDLDHS NFPEETRLDL TKKHEINCEL  180
VQNEHLYQHG DITSDSAHMH ADLYHQSREP IVNQNEDTKC HGFSGQLGHE SLSGLQVFNN  240
SHENPTKFVN KPMRKLMLSD FKASDKRRGM LRRCLQFENS MDCPKSQHSK MSGSNLQQFP  300
VSTTPKLTMD RYQSSGSSFS SQAGKSPTIN ILKGKGIGLH LNSLVRTLPP APASAPDHKE  360
MHDASIKPLI LANVKQTQLT QGETKIFKGV VSQSVNMIHG NEGSADIMSN CLSSHGANGF  420
LLNKAKRTES ESRLGKRKLR SVQHDSFDNL NESRSKRERT ESFATGECRR CSCKRSRCLK  480
LYCECFVAGA YCAGSCSCQG CSNKPEFEEI VSETRNLILS RNPLAFSSKV EETVSESLPN  540
NVNIIQLAPS APRLKRGCNC KKSMCLKKYC ECYQANVGCS DGCRCEGCKN TFGRKAGHDD  600
SQKRSLSRHV QEFEGACDEN MEVCTMKTII TQTDFSNLQY HELVTPSLHP PEHCVSVPLS  660
GHLSLGSLSS PDSCMIPCND KVLKPPPTAL HDMLLTSSTS SSHQISYEWE SDTNSSEKAT  720
NLQPSYDADK YCQSRNTSPA QFVKSKDFLP LP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1347159014120Protein lin-54 homolog
5fd3_B3e-1347159014120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-37TESMIN/TSO1-like CXC 2