PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1002s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 221aa    MW: 25331.2 Da    PI: 7.165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1002s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.6e-181965248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +W  eEd++l ++v ++G ++W++Ia++ g++R++k+c++rw++yl
  Kalax.1002s0015.1.p 19 AAWKLEEDQKLEEYVLKHGAKRWNKIAEKAGLNRSGKSCRLRWLNYL 65
                         58*******************************************97 PP
2Myb_DNA-binding51.81.8e-1671115147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+ +
  Kalax.1002s0015.1.p  71 RGNMSEDEEDLIKRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNFH 115
                          89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3281365IPR017930Myb domain
SMARTSM007171.0E-141767IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-2818112IPR009057Homeodomain-like
PfamPF002496.8E-171965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-232071IPR009057Homeodomain-like
CDDcd001672.16E-112065No hitNo description
PROSITE profilePS5129424.03866120IPR017930Myb domain
SMARTSM007171.1E-1570118IPR001005SANT/Myb domain
PfamPF002498.4E-1571115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2372119IPR009057Homeodomain-like
CDDcd001672.95E-1073116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAAAGNTRGS SYKEVTSRAA WKLEEDQKLE EYVLKHGAKR WNKIAEKAGL NRSGKSCRLR  60
WLNYLKPGIK RGNMSEDEED LIKRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNFHLKTRV  120
LGETETYNIP SKHKTSRTSY YEKEPTTSGN NNHECHAGNP NANQIDNECQ AAGNLNANQI  180
NEADNCFDWS PHISDCSEWV NRLLDLDVEQ WLQEDMDILN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261812027128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825024.13e-61PREDICTED: transcription factor MYB114-like
SwissprotP102902e-45MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A2I4F0596e-60A0A2I4F059_JUGRE; transcription factor MYB114-like
STRINGXP_008364573.15e-60(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27920.11e-47myb domain protein 0
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]