PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1020s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 445aa    MW: 48627 Da    PI: 7.8483
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1020s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.82e-40173250178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +CqvegC++dls  k+yhr+h++Ce hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+++
  Kalax.1020s0009.1.p 173 RCQVEGCNVDLSGSKDYHRKHRICESHSKCPKVIVGGLERRFCQQCSRFHKLSEFDEKKRSCRKRLSDHNARRRKPRS 250
                          6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-33166235IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.385171248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.94E-37172252IPR004333Transcription factor, SBP-box
PfamPF031109.2E-32174247IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MWDTGSSLQF DWENLVMLDG KGNQVPLKLN SSVWGSDIDG IHLHSHACDF GSINGFSGLD  60
AAHVSSVSSK STSADSSSLG KTSIISVFDE SRSVSIAVDF AKSKNPAAAS SVSVEASGGS  120
VEPVIGLKLG KRTYFEDFCS ASNAKTLTVS DKPLSSASSR RSGSSHQTMQ SLRCQVEGCN  180
VDLSGSKDYH RKHRICESHS KCPKVIVGGL ERRFCQQCSR FHKLSEFDEK KRSCRKRLSD  240
HNARRRKPRS EARHFNLDGK QQVGFVFNMP PCHQARPTLS PWETCGSKFT LTRDYYPFSE  300
KRTAGADHHQ YLLGNRISNT VSIQLYNNEG SPSQCATHEF LDDGAGECIT PSNIAAAQDL  360
RSAPSLLSTN GMGSCNSDPV PIYHQPNNVF QQPETRAVLH LASPQIWGSE PHPSDSPAPL  420
VGFQSNLRPY SETFDLSFGE NQPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-261742471184squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229246KKRSCRKRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.38e-60squamosa promoter binding protein-like 2