PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1021s0011.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 333aa MW: 36453.3 Da PI: 8.5804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1021s0011.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.5e-09	279	326	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Kalax.1021s0011.2.p 279 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 326 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.41E-11	273	330	No hit	No description
SuperFamily	SSF47459	2.49E-15	273	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	275	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-6	279	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-10	281	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEKELFPWTQ NQNPATYCSP DMSYYTTTSN SNWDHSLDQF ESALSSMVSS PAASATPASA 60 SAGVHLIELI GKLGTISSHS YIPNHIHSAD NSCYTTPINS PPKLNLDQMP AFPTDPGFAE 120 RAARFSCFGS RSFNGRIGGS QFPDSEMAYN NTPLDGSAKY FPGSASHLDG VHIQDTTTTT 180 NKLPSDSKEE SSVSQKVQSN EAMGRKRKSA PRGKPKETQS SKAAMESNDS DSKRTKSDEN 240 EKGRKSGGHQ KQSKDNSKPP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD 300 LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE VS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002516384.2	4e-95	transcription factor bHLH77 isoform X1
Refseq	XP_015573047.1	5e-95	transcription factor bHLH77 isoform X2
Swissprot	Q9SRT2	4e-72	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2P5FCM5	6e-98	A0A2P5FCM5_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_002516384.1	1e-94	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.1021s0011.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]