PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1025s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 225aa MW: 25602.1 Da PI: 8.5961

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1025s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.1	1.3e-26	59	108	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k ++ +++s+yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl Kalax.1025s0011.1.p 59 KVLTRKMISQYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 108 77999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.189	41	129	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-22	61	108	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MAAGGWPEFN SGFSDVISKD QAFLPFSADF SDENEIRDVE APGKKRARKV KEEQIRSSKV 60 LTRKMISQYF YMPITQAAKE LNIGLTLLKK RCRELGIRRW PHRKLMSLQT LITNVQELGR 120 DEGEGSDEKL KMAVEVLERE RKMMEELPDM QLEDKTKKLR QACFKANYKK RKMVGNGGAS 180 NNGGRSCTTS LSSSYSGIKY LEDEEDDEMR SLLSDCFSSS DSNSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287140.1	1e-76	protein RKD1
Swissprot	Q9M9U9	3e-54	RKD1_ARATH; Protein RKD1
TrEMBL	F6GT76	1e-72	F6GT76_VITVI; Uncharacterized protein
STRING	VIT_17s0000g06250.t01	2e-73	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	9e-56	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kalax.1025s0011.1.p