PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1028s0006.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 270aa    MW: 29301.8 Da    PI: 6.711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1028s0006.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-06187230755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          e +rrRR+ i +++  L+ l P++   +       ++Le +++YIk+Lq
  Kalax.1028s0006.2.p 187 ETDRRRRKIIGERLKALQGLAPQS---G--QGHPGDVLEDTIDYIKYLQ 230
                          779********************9...4..444589************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.633180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9183240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0042186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-9187238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.48E-6190234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEEKGSNEDP AQMPSGSVLS GLRTPIAYST SAPNQHCVHS SNAMALRQWM YYPYMPQNCA  60
NVMSGASSSG CQASPYGDNH WKIASSSNPP SIVKSVPQMF SNGGWYGAPT GAANSMVCGK  120
NVWYGMPQLE DELQQKLGSE SSQSQIQDDI STTEGGSRNG VHQANVAILD LVPEQHNKAK  180
KPGSTYETDR RRRKIIGERL KALQGLAPQS GQGHPGDVLE DTIDYIKYLQ LQLKDLSHSR  240
FGGESVSDPL VFIEVLLTIH LIQFCKVNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-12LJRHL1-like 1