PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1030s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 349aa    MW: 38083.8 Da    PI: 8.0035
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1030s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.61.5e-33912301128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                          lp+G++F+Ptd+e+v ++L++kv +++     ++++   ++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++    
  Kalax.1030s0012.1.p  91 LPAGVKFDPTDQEMV-QHLEAKVVATHrlhplIDEFIPtLEGEnGICYTHPEKLP-GVRKDGLIRHFFHRPSKAYTTGTRKRRKVStdee 178
                          799************.88999988777786553332322443346**********.555666677******************7333455 PP

                  NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            + +W++tgk+++v++ +ge++g kk+Lv+y   gr++k+ekt+Wvmh+y++
  Kalax.1030s0012.1.p 179 ggETRWHKTGKTRPVFV-NGEVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHI 230
                          55778************.999***********66589**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3884249IPR003441NAC domain
PROSITE profilePS5100533.3791249IPR003441NAC domain
PfamPF023652.6E-1592230IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTWCGSSSVP NDRVVAREID IVVFPDPHPH PAQATSARDE QGSQEKDGAR VVVAAAAQHA  60
DAEVRKLTCP SCRRHVEIQD QGGFIQELPG LPAGVKFDPT DQEMVQHLEA KVVATHRLHP  120
LIDEFIPTLE GENGICYTHP EKLPGVRKDG LIRHFFHRPS KAYTTGTRKR RKVSTDEEGG  180
ETRWHKTGKT RPVFVNGEVK GFKKILVLYT NYGRQRKPEK TNWVMHQYHI GTGEEERDGE  240
LVVSKVFYQT QPRQCGGGSG FKDIIGHGHG HSLVVEPARS SGQQQEVALG NVGYVEFYSP  300
QYMMGYGGST VDGGGSPLQM APNVVVHGGG SSFIGLGGGA SNESVSRK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956418.11e-130NAC domain-containing protein 10-like
RefseqXP_015956419.11e-130NAC domain-containing protein 10-like
SwissprotF4HY611e-108NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A445DQX51e-129A0A445DQX5_ARAHY; Uncharacterized protein
STRINGGLYMA07G32250.11e-129(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-107NAC domain containing protein 10