PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1031s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 519aa    MW: 58801.6 Da    PI: 4.5504
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1031s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.7e-1516773398
                         -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         +  +++++  g+ + v++  +k  g+++l +GW  Fvk+n+L  gDf+vF++dg s f   v++f+
  Kalax.1031s0006.1.p 16 PERVVVRSGAGKDFHVEV--SKENGWVYLDRGWAAFVKDNRLMRGDFLVFRYDGLSAF--DVTIFD 77
                         557999************..********************************998888..888776 PP
2B334.34.1e-112633263299
                          --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +  ++l++   + +  k+  +k  g ++++ GW+eFv  ngLk g f+vF++dg+ +f  +vk+f++
  Kalax.1031s0006.1.p 263 DPERVVLRNCLQEAFAAKV--CKENGVVYFGVGWREFVAWNGLKLGYFLVFRYDGEGGF--NVKIFDN 326
                          5556888888888899999..999999***************************98888..*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.97E-14177No hitNo description
PROSITE profilePS5086312.478179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16580IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.031679IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-141384IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-121576IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-13171255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-12174255IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.104175251IPR003340B3 DNA binding domain
SMARTSM010192.2E-7178275IPR003340B3 DNA binding domain
CDDcd100171.34E-6186260No hitNo description
PfamPF023627.9E-9259326IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-13262328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-12264329IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.573267327IPR003340B3 DNA binding domain
CDDcd100178.18E-10280325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
RLCDAFVAKL TPWTLPERVV VRSGAGKDFH VEVSKENGWV YLDRGWAAFV KDNRLMRGDF  60
LVFRYDGLSA FDVTIFDYTA CDKQENNEPD DTQEQEDDSD GSHDDQQEDS HDDEGDDDDI  120
DHVDEDSDDD TASYKHLSLT AAGSSKGGGS SRKRAYHRHE WVDSDAELLV EPDNLYFIFT  180
QRFGKRENQL AVPSVAVRDF NVELEDKILY RDPAGREYVG RVSKWKTGQI WIGGWKSFCK  240
KNQLTADDKC VCELVVSGGK RNDPERVVLR NCLQEAFAAK VCKENGVVYF GVGWREFVAW  300
NGLKLGYFLV FRYDGEGGFN VKIFDNSDCE KCLFEDGKEG EDQIKGVDNG RGEAADRDGE  360
ESSDEDEEDE GESNDSAADF SDSTYSETSE ASGSGTRINT KKKINIHPKR GIQSELQLSW  420
WPTWCLSTLK QQLAMIRVRK QAPKPRKTPW PRLAEHQQEL RDNAVALVGP QNPSFVVDME  480
ERNVSATSRS VYVPRSFSKE HLDRFSVQAT LFDSEERK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.15e-10B3 family protein