PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1033s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 276aa    MW: 31622.2 Da    PI: 6.7148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1033s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.1e-08131171954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Kalax.1033s0006.1.p 131 ARHRRERISEKMRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 171
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.919122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-13128182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.93E-9128176No hitNo description
SMARTSM003531.2E-12128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5132171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDPHTRGHNH KQLISHSIAW ASLFFVGSPA AQHHQLTLLD HHHHEHHQHN NNHIPEEEED  60
QGNNQPRRDL VVARNNEEDD RDDEVDEELS AMKEMMYKIA AMQPVDIDPS TIRKPKRRNV  120
RISDDPQSVA ARHRRERISE KMRILQRLVP GGTKMDTASM LDEAIRYVKF LKRQIRHLQQ  180
DDHPQQQPPP VLMPAPESSK SYLNNTCADD HHLTVTVNDN KHQQYVRLFS ADSTTAANNT  240
STVSLLQNDD RQADDISLHF LNGSAIMDKL PAYGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.14e-45bHLH family protein