PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1035s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 372aa    MW: 41562 Da    PI: 6.7135
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1035s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.3e-51231482128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrF Ptdeelv++yL++kve+k++++ + ik++diyk++PwdLpk+ + +++ewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+
  Kalax.1035s0002.1.p  23 LPGFRFYPTDEELVDFYLRRKVEKKPFSI-DLIKQIDIYKYDPWDLPKTSTVGDNEWYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKP 111
                          59***************************.99***************888889************************************* PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++s++++l glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Kalax.1035s0002.1.p 112 IHSSSSSLLGLKKSLVYYRGNAGKGTKTDWMMHEFRL 148
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.61722191IPR003441NAC domain
SuperFamilySSF1019411.44E-5422191IPR003441NAC domain
PfamPF023655.3E-2524148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEACIDDTIM SSNEREEDDE SQLPGFRFYP TDEELVDFYL RRKVEKKPFS IDLIKQIDIY  60
KYDPWDLPKT STVGDNEWYF FCKRGRKYRN SVRPNRVTGS GFWKATGIDK PIHSSSSSLL  120
GLKKSLVYYR GNAGKGTKTD WMMHEFRLPA PLDFITHNTP PPPPPPHPII TADSTDTQDA  180
EVWTVCRIFK RNVPSRKYTS NWREISTQRN PSSSSSSSSM GSMAAGTSNS SSAPACSSTA  240
ANNNDHKNKS SNYICFTATG NDQQQTAALI QNPNYSNTSS HGDGTSRLTT VPAARLGHEQ  300
RSPKSFSYNP MMQIQITNMP PTTPAPSSHP CAESSSVSPM DITLNEGLNT DQFATNESWD  360
ELGQFWNLFQ E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-49151977171NO APICAL MERISTEM PROTEIN
1ut4_B3e-49151977171NO APICAL MERISTEM PROTEIN
1ut7_A3e-49151977171NO APICAL MERISTEM PROTEIN
1ut7_B3e-49151977171NO APICAL MERISTEM PROTEIN
3swm_A3e-491519710174NAC domain-containing protein 19
3swm_B3e-491519710174NAC domain-containing protein 19
3swm_C3e-491519710174NAC domain-containing protein 19
3swm_D3e-491519710174NAC domain-containing protein 19
3swp_A3e-491519710174NAC domain-containing protein 19
3swp_B3e-491519710174NAC domain-containing protein 19
3swp_C3e-491519710174NAC domain-containing protein 19
3swp_D3e-491519710174NAC domain-containing protein 19
4dul_A3e-49151977171NAC domain-containing protein 19
4dul_B3e-49151977171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063813.17e-98transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK554e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A068UZ642e-96A0A068UZ64_COFCA; Uncharacterized protein
STRINGcassava4.1_024488m8e-91(Manihot esculenta)
STRINGXP_002513398.19e-91(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-75NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]