PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1038s0004.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 480aa MW: 52380.3 Da PI: 10.6024

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1038s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	7.9e-14	265	309	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +q G+g+W+ Iar + k+Rt+ q+ s+ qky Kalax.1038s0004.1.p 265 PWTEEEHRLFLIGLQQVGKGDWRGIARNFVKTRTPTQVASHAQKY 309 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.402	258	314	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-17	260	315	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-16	261	313	IPR006447	Myb domain, plants
SMART	SM00717	5.2E-10	262	312	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-11	264	308	IPR009057	Homeodomain-like
CDD	cd00167	1.40E-8	265	310	No hit	No description
Pfam	PF00249	1.9E-10	265	309	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MGTSEQKDKS LSSLCIAISL HTSAKYLYAK NILGSTPDVF PGYFSRNLAS SFDPMLAGIF 60 LKNLSDVSGK NDLPLNAASR RKSRIYSHMY FTFSHDNLSR SLQAISCASV DPWYGSSRIK 120 ILLIWDVTFW VSSAISTSVL YSLVKAIRHC IHVFFSFSPT SSRVRIYTFA RSLQLLSFSH 180 PAISTTLVMD GGAAAESGIM LFGVRLTGGS AATSLAFRKS VSMNNLSQFE HGARDAAAEV 240 IAAGYASDDY VHASGRSRER KRGTPWTEEE HRLFLIGLQQ VGKGDWRGIA RNFVKTRTPT 300 QVASHAQKYF IRQNNQNRRR RRSSLFDITS DAVLSSNMEE DHQVRQELQV SQSVCAVPAA 360 PASLSPTKNS MELEATPLTL GQPASGSHTH SRRPHHRRLQ HPKTTFNPIR AIPIPPSSRL 420 ASLRLDPSAI PDPLPLSLRL PTGSPSNSPA SSSRSSSPAF QGMPPDSLNS SGDSIISVA*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MGTSEQKDKS LSSLCIAISL HTSAKYLYAK NILGSTPDVF PGYFSRNLAS SFDPMLAGIF  60
LKNLSDVSGK NDLPLNAASR RKSRIYSHMY FTFSHDNLSR SLQAISCASV DPWYGSSRIK  120
ILLIWDVTFW VSSAISTSVL YSLVKAIRHC IHVFFSFSPT SSRVRIYTFA RSLQLLSFSH  180
PAISTTLVMD GGAAAESGIM LFGVRLTGGS AATSLAFRKS VSMNNLSQFE HGARDAAAEV  240
IAAGYASDDY VHASGRSRER KRGTPWTEEE HRLFLIGLQQ VGKGDWRGIA RNFVKTRTPT  300
QVASHAQKYF IRQNNQNRRR RRSSLFDITS DAVLSSNMEE DHQVRQELQV SQSVCAVPAA  360
PASLSPTKNS MELEATPLTL GQPASGSHTH SRRPHHRRLQ HPKTTFNPIR AIPIPPSSRL  420
ASLRLDPSAI PDPLPLSLRL PTGSPSNSPA SSSRSSSPAF QGMPPDSLNS SGDSIISVA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908824.1	2e-76	transcription factor MYB1R1
TrEMBL	A0A2H5N8F0	7e-75	A0A2H5N8F0_CITUN; Uncharacterized protein
STRING	evm.model.supercontig_5.314	8e-76	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	2e-60	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.1038s0004.1.p