PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1041s0013.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 324aa    MW: 36760.4 Da    PI: 4.4707
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1041s0013.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-1518971498
                         T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 14 grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                           l+l   f+++          +  +++++  g+ + v++  +k  g+++l +GW  Fvk n+L  gDf+vF++dg s f   v++f+
  Kalax.1041s0013.2.p 18 VKLRLCDAFVAKLtpwT----LPERVVVRSGAGKDFHVEV--SKENGWVYLDRGWAAFVKNNRLMRGDFLVFRYDGLSAF--DVTIFD 97
                         55777888887774332....5667***************..********************************998888..888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0029799IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-157101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-177100IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-131496IPR003340B3 DNA binding domain
CDDcd100177.35E-151997No hitNo description
PROSITE profilePS5086311.2233999IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14216317IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-13219318IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.797220319IPR003340B3 DNA binding domain
SMARTSM010194.7E-7223319IPR003340B3 DNA binding domain
PfamPF023622.0E-7231318IPR003340B3 DNA binding domain
CDDcd100172.93E-7231317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAALLQFYSV FLPNINSVKL RLCDAFVAKL TPWTLPERVV VRSGAGKDFH VEVSKENGWV  60
YLDRGWAAFV KNNRLMRGDF LVFRYDGLSA FDVTIFDYTA CEKQENEPDD TQEQEDDSGG  120
SDDEEQEDSD DEGDDDDIDH VDEDSDDDTG DDDIDYIIIE SSDESYEADS NTSRHRAPKR  180
KHVSSRSGSS KGGGSSRKRA YNRHEWVDSD AELLVEPDNL YFIFTQRFGK RENQLAVPSV  240
AVRDFNVELE DKILYRDPAG REYVGRVSKW KTGQIWIGGW KSFCKKNQLT ADDKCICELV  300
VSGGERKCGA MRVHIIRNAF KNV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-14B3 family protein