PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1060s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 316aa MW: 36185.9 Da PI: 9.1723

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1060s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.6	3e-10	131	212	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h++k+ + ++tled++g++ k+ ++++ ++++L +gD +vF+l++ ++f Kalax.1060s0002.1.p 131 FVKPMLQSHVTGGFWLGLPQRFCKAHMSKE--DEMMTLEDKDGNESPSKYLADRTG------------LNDHELVDGDALVFQLIRPTKF 206 89**********************9884..559***********444444............57*************97777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Kalax.1060s0002.1.p 207 --KVYIIR 212 ..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.29E-16	125	214	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.6E-12	128	214	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.36E-18	129	212	No hit	No description
Pfam	PF02362	5.9E-9	131	212	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-13	131	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVASATSNYE ELRRQRLEKN KKRMEELNLL NLSKSLSAAT PKLSPAKKQW KPKSARKEVD 60 LSAVRRSSHT ADKPQPDYKE GMIEPLGSLR RGPYRRRDLL NRVYVSDEFR MYVVQRAEQL 120 ELELGYEFPC FVKPMLQSHV TGGFWLGLPQ RFCKAHMSKE DEMMTLEDKD GNESPSKYLA 180 DRTGLNDHEL VDGDALVFQL IRPTKFKVYI IRVNEHENGD ESNEDVADED VNDVVLLKSV 240 PIAKPRKVAK PRKVAESSPG TRRSRRKKST DEDEDEDEDD DDDFFLVKVP ETKSGELTNP 300 SAGTRRSKRI KSSRK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647760.1	4e-89	PREDICTED: B3 domain-containing protein At3g19184 isoform X1
Swissprot	Q1G3M3	2e-69	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	F6HQC1	1e-88	F6HQC1_VITVI; Uncharacterized protein
STRING	VIT_03s0063g00620.t01	2e-89	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-63	B3 family protein

Link Out ? help Back to Top
Phytozome	Kalax.1060s0002.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]