PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1063s0009.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 348aa MW: 38911.5 Da PI: 4.5193

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1063s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.7e-09	278	325	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k q+++Le+++++++ p+ +++ + + ++L+ ++V WF +R Kalax.1063s0009.1.p 278 RLKKVQVDTLERVYRRTKRPTNTMISSIVHVTNLPRKKVVKWFEDKRS 325 67899***************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.556	270	330	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.02E-9	272	337	IPR009057	Homeodomain-like
CDD	cd00086	3.73E-6	273	324	No hit	No description
SMART	SM00389	4.0E-4	276	334	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.1E-8	277	326	IPR009057	Homeodomain-like
Pfam	PF00046	7.5E-7	278	325	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002229	Biological Process	defense response to oomycetes
GO:0009414	Biological Process	response to water deprivation
GO:0009682	Biological Process	induced systemic resistance
GO:0009787	Biological Process	regulation of abscisic acid-activated signaling pathway
GO:0010118	Biological Process	stomatal movement
GO:0050832	Biological Process	defense response to fungus
GO:2000022	Biological Process	regulation of jasmonic acid mediated signaling pathway
GO:2000071	Biological Process	regulation of defense response by callose deposition
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MASVSSVNVS ASFRSASTAS SYCSRLGVHV KVASPNQTLQ TSASSARSIA AFARRRKSDS 60 VIISSSSSKN KKNVSKDVVQ EEDVDDDAFE ALFAQLEEDL KNDPSVEDED GELTEEELAK 120 LESELEEAMM EDDDLFKMLS AAAGGSENDG DEDEDEDEDE DEDEDVEEDK SAKLKNWQLR 180 RLARALKVGR RKTSIKSLAA ELCLERPLVL EMLRNPPPKL LMMSAMLPDE PVQPARTESL 240 VTPMEVVETV PEEKIVVPDT DKKVPIHAMQ SQWSSQKRLK KVQVDTLERV YRRTKRPTNT 300 MISSIVHVTN LPRKKVVKWF EDKRSEDGVP TERLPYERST TETVFSS*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MASVSSVNVS ASFRSASTAS SYCSRLGVHV KVASPNQTLQ TSASSARSIA AFARRRKSDS  60
VIISSSSSKN KKNVSKDVVQ EEDVDDDAFE ALFAQLEEDL KNDPSVEDED GELTEEELAK  120
LESELEEAMM EDDDLFKMLS AAAGGSENDG DEDEDEDEDE DEDEDVEEDK SAKLKNWQLR  180
RLARALKVGR RKTSIKSLAA ELCLERPLVL EMLRNPPPKL LMMSAMLPDE PVQPARTESL  240
VTPMEVVETV PEEKIVVPDT DKKVPIHAMQ SQWSSQKRLK KVQVDTLERV YRRTKRPTNT  300
MISSIVHVTN LPRKKVVKWF EDKRSEDGVP TERLPYERST TETVFSS*

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010648647.1	1e-108	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	6e-66	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	F6H309	1e-108	F6H309_VITVI; Uncharacterized protein
STRING	VIT_04s0008g05190.t01	1e-109	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	9e-63	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Phytozome	Kalax.1063s0009.1.p

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]