PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1065s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 273aa    MW: 30387.5 Da    PI: 7.8382
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1065s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.81.5e-092189270
             trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                         Wt    l+L++    +e +  ++ +  ++W+ +s+++++ g++r+  qC+ +w++l  +y  ik ++++
  Kalax.1065s0002.1.p 21 WTLTDSLTLVNEIAAVEADCLDALSYYQKWKIISDNCAALGVNRTLDQCRRRWDSLFADYNSIKLWDED 89
                         888888888888888999999999999************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7132177IPR017877Myb-like domain
PfamPF138373.7E-82891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPQKKTESAS RRTRSQVAPD WTLTDSLTLV NEIAAVEADC LDALSYYQKW KIISDNCAAL  60
GVNRTLDQCR RRWDSLFADY NSIKLWDEDG GGYWGLGRER RRGIGLPEEF DRDLFNAVDV  120
VVKGQVERAS SRHDAVLEDA DADPLGVISP PVFKKQNHQL TPQKRQIEVK KEKQIVGDKK  180
TGPMEVMATQ KGEKATSSSV EVMASQLREK AEMIQAILEG KIAENKDYTL SDLKQGAVSR  240
ANLARRQGDK LIDCFGAIGS TLDQLCKVTL TR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-53sequence-specific DNA binding transcription factors