PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1068s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 168aa    MW: 18442 Da    PI: 10.5049
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1068s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-13103146447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT++E+  ++ + ++lG+g+W+ I++++   Rt+ q+ s+ qky
  Kalax.1068s0015.1.p 103 WTEDEHRNFLSGLEKLGKGDWRGISKHFVPSRTPTQIASHAQKY 146
                          *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532518IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.06595151IPR017930Myb domain
SuperFamilySSF466897.25E-1896152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1798150IPR006447Myb domain, plants
SMARTSM007176.1E-1099149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-12101146IPR009057Homeodomain-like
CDDcd001674.15E-11103147No hitNo description
PfamPF002491.4E-11103146IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSKACSNCGS MGHNSRMCIT YDKSTLVGSG FKLFGVQLDA PVATSLSAMK ESCSVGCFSP  60
SSSLSSCALS NASLPRYPSK LSTGYLSDHL NGHPQNRKKG ALWTEDEHRN FLSGLEKLGK  120
GDWRGISKHF VPSRTPTQIA SHAQKYFLRQ NNLNRKRKGP RLYHVRF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845997.17e-51PREDICTED: myb-like protein J
TrEMBLA0A0B0MXX78e-50A0A0B0MXX7_GOSAR; Transcription factor MYB1R1
TrEMBLA0A2I4GQ252e-49A0A2I4GQ25_JUGRE; myb-like protein J
STRINGEOY304927e-49(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.18e-37MYB_related family protein