PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1071s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 199aa    MW: 21779.8 Da    PI: 5.1065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1071s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-181262155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr +  +g+Wv+eIr p++   ++r++lg+f t+e+Aa+a++ a+++++g
  Kalax.1071s0008.1.p 12 PVYRGVRMRN-WGKWVSEIRQPRK---KTRIWLGTFPTPEMAARAHDVAALSIKG 62
                         68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-131262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-321371IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-221371IPR016177DNA-binding domain
SMARTSM003807.9E-361376IPR001471AP2/ERF domain
PROSITE profilePS5103223.4991370IPR001471AP2/ERF domain
CDDcd000183.21E-331472No hitNo description
PRINTSPR003671.4E-101425IPR001471AP2/ERF domain
PRINTSPR003671.4E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVVAVGGRDK HPVYRGVRMR NWGKWVSEIR QPRKKTRIWL GTFPTPEMAA RAHDVAALSI  60
KGKNAILNFP DLVSSLPRPA SSSPRDVQEA AAKAAAMENL GVSEVGLSEE ASDELSEIVE  120
LPSLDACWDD SAESSRNEFV FVEECGWLYT PPWLQSVEEC GGITVGSTPC FPMRDAPPSE  180
NRSPSLCVRV RCIYCLVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18670472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276134.15e-64LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-62DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A200QDK72e-64A0A200QDK7_9MAGN; AP2/ERF domain
STRINGXP_006476039.12e-63(Citrus sinensis)
STRINGXP_006450687.12e-63(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]