PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1072s0004.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 169aa MW: 17495.4 Da PI: 4.4131

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1072s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.8e-05	87	108	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +Cgk F ++ + H+r+H Kalax.1072s0004.1.p 87 PCLICGKAFHSQKAFFGHLRVH 108 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.17E-5	85	111	No hit	No description
SMART	SM00355	0.0083	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.014	86	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MAGKGDKAAG KKVAEGEEDS GAKDDNPDES VALPAKKRNR PDVAAGGSSV AAAASESRVP 60 AAVVIQEPNL PAAAAVPAAR GERLLWPCLI CGKAFHSQKA FFGHLRVHPE KTYKGAFPPP 120 TFDPEGSPEP EAEQVEAAVP PVPNEEEASG VNTGIDLNVP PREEDDEE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	4e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.1072s0004.1.p