PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1073s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 254aa    MW: 26729.9 Da    PI: 7.7226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1073s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008183103121
                          EEETTTTEEESSHHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                          y+C+ C+k+F++   L  H  
  Kalax.1073s0007.1.p  83 YECKTCSKTFPSFQALGGHRA 103
                          99*********9888877765 PP
2zf-C2H213.20.00026157179123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg  F++   L  H+r+H
  Kalax.1073s0007.1.p 157 HRCSVCGSEFTSGQALGGHMRRH 179
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.44E-782105No hitNo description
SMARTSM003550.2983105IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-1083105IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.13883110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576675.44E-7152179No hitNo description
PfamPF139122.4E-11156181IPR007087Zinc finger, C2H2
SMARTSM003550.013157179IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681157179IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MELPVDEVAA AAVVPGPLQN ISKGKRTKRS SGIASDEEED RRSYDSVVTE EEQDLANCLI  60
LLARAEVVVG AKRRIADVMG GCYECKTCSK TFPSFQALGG HRAGHGKPKS HIDDCDFAPS  120
SSSNCSVSPK PPTPPTTAAN RNDVVVAKSS TRLSKAHRCS VCGSEFTSGQ ALGGHMRRHR  180
AVPVPSRSPS AGPSSMGSGG ASSLEAKTRS FLSLDLNLPA PEDGEISQCQ QNAAFHQLET  240
HAFSTHALLG CHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-32C2H2 family protein