PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1087s0007.5.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 259aa    MW: 28637.9 Da    PI: 4.6652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1087s0007.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.98.9e-172576155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa+a++ a+ +++g
  Kalax.1087s0007.5.p 25 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAEAYDMAAIEYRG 76
                         89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-242586No hitNo description
PfamPF008473.6E-122576IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-182586IPR016177DNA-binding domain
PROSITE profilePS5103218.5582684IPR001471AP2/ERF domain
SMARTSM003804.3E-272690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-182685IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEDQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTFATQ  60
EEAAEAYDMA AIEYRGLNAV TNFDLSRYAK WLSCSHQEPN AHKSDCNLVS HNQLGHHQAA  120
DSSLFTSPAA SLSENYTSED ADEAALMNNT TSADQWGRRT QNSKEEEEFY PSYSNTTTTS  180
AAATLSSGED SDSKSSSTVT NKRFFPDDIQ TIFECTQQES VSGMCAGTTD FIHIGSEDMI  240
FGEAELSAYT SSLFDLDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067459.11e-66AP2-like ethylene-responsive transcription factor At1g16060
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.23e-48ARIA-interacting double AP2 domain protein