PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1096s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 426aa MW: 46824.4 Da PI: 8.1277

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1096s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.3e-39	103	162	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s Kalax.1096s0011.1.p 103 PDKILPCPRCNSMETKFCYYNNYNVKQPRHFCKNCQRYWTAGGSMRNVPVGSGRRKSKSS 162 68999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-25	100	152	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	105	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.556	107	161	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	109	145	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MSPLPNPTIK LFGKTIPLSP PNLEALHPAS DWSDDGELAG AGSSKEMEEV GDFDAKKHVV 60 QVEDEDHHGS ASPGIIDLEG SAEGLENRDQ SQDAPNGKTL KRPDKILPCP RCNSMETKFC 120 YYNNYNVKQP RHFCKNCQRY WTAGGSMRNV PVGSGRRKSK SSGGPFCRQI LVNETELNGM 180 LRPESHAPLC DSMANVLNMA ESRENCWEYR IRDKRIHMVR SCDSWLSEPN SGGSNLTEKG 240 NLVQDGMKNF QGYPFQVPCY PWPGWPIPWS PATPTPHLGL AVSPGQYWAS AMMAPWIHHS 300 SISSPSTASQ HSSLSSSPNS PTLGKHSRGG EMINDRNESD EKAAQSKPKA SRGIWIPKTL 360 RIDDPNQAAK SSIKEGGIFK SFPLKNGSIG NHKVPDRSLR LHTNPAALSR SQNFHETTSM 420 EHTSS*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MSPLPNPTIK LFGKTIPLSP PNLEALHPAS DWSDDGELAG AGSSKEMEEV GDFDAKKHVV  60
QVEDEDHHGS ASPGIIDLEG SAEGLENRDQ SQDAPNGKTL KRPDKILPCP RCNSMETKFC  120
YYNNYNVKQP RHFCKNCQRY WTAGGSMRNV PVGSGRRKSK SSGGPFCRQI LVNETELNGM  180
LRPESHAPLC DSMANVLNMA ESRENCWEYR IRDKRIHMVR SCDSWLSEPN SGGSNLTEKG  240
NLVQDGMKNF QGYPFQVPCY PWPGWPIPWS PATPTPHLGL AVSPGQYWAS AMMAPWIHHS  300
SISSPSTASQ HSSLSSSPNS PTLGKHSRGG EMINDRNESD EKAAQSKPKA SRGIWIPKTL  360
RIDDPNQAAK SSIKEGGIFK SFPLKNGSIG NHKVPDRSLR LHTNPAALSR SQNFHETTSM  420
EHTSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-59	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Kalax.1096s0011.1.p