PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1129s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 321aa    MW: 35000.3 Da    PI: 6.7307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1129s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEde+l+ +++q+G+g +W + +++ g++R++k+c++rw++yl
  Kalax.1129s0012.1.p 14 RGPWSPEEDEILKSYIQQHGTGgNWIALPSKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding38.72.4e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++T+eEd  +  +  + G++ W+ Ia+++  gRt++++k++w++
  Kalax.1129s0012.1.p  69 GAFTEEEDRVIFSLYYEIGSR-WSIIAAKLH-GRTDNDVKNHWNT 111
                          89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139962IPR017930Myb domain
SuperFamilySSF466895.75E-2811109IPR009057Homeodomain-like
SMARTSM007178.6E-131364IPR001005SANT/Myb domain
PfamPF002498.0E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-251569IPR009057Homeodomain-like
CDDcd001671.00E-91662No hitNo description
PROSITE profilePS5129421.82763117IPR017930Myb domain
SMARTSM007173.7E-1167115IPR001005SANT/Myb domain
PfamPF002496.3E-1169111IPR001005SANT/Myb domain
CDDcd001673.08E-870113No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2270115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDEILKSYIQ QHGTGGNWIA LPSKAGLKRC GKSCRLRWLN  60
YLRPDIKHGA FTEEEDRVIF SLYYEIGSRW SIIAAKLHGR TDNDVKNHWN TKLKKLIMLK  120
DQAAYPEFLR STKPAHSSFS VSTDHESYSF VRFPSLKTET HQESLPPMPN LPPGVSGYGS  180
SLALMHHDPV GFTVPAPLLS MPTYHASKAT AIPPNSSESE LSGGSSSTMN AGTVSWPDGG  240
GCGVEDGGLL NDILIYGGEG MNNGCHMFQS TFESGNQKCS SSEDLGNGAA PTFSAMLSDY  300
IYELKPQGVF QNQNGLIDQY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-25141174105C-Myb DNA-Binding Domain
1msf_C2e-25141174105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506838.26e-75transcription factor MYB87-like
TrEMBLA0A1S3ULA41e-73A0A1S3ULA4_VIGRR; transcription factor MYB87-like
STRINGXP_007160258.19e-72(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-69myb domain protein 36