PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1135s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 170aa MW: 18940.1 Da PI: 9.6891

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1135s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.2	2.4e-17	10	71	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r R+++t eq+ Leel++ +p+a+++ ++ ++l +++ ++V++WFqN++a++k+ Kalax.1135s0008.1.p 10 RAARWCPTGEQVMLLEELYKGgLTNPTAAQIHQIVAHLsrfgKVQGKNVFYWFQNHKARDKQ 71 568***************99************************************97 PP
2	Wus_type_Homeobox	105.4	3.8e-34	11	72	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+Pt eQ+++Leelyk Gl +P++++i++i a+L+++Gk+++kNVfyWFQN+kaR++q+ Kalax.1135s0008.1.p 11 AARWCPTGEQVMLLEELYKGGLTNPTAAQIHQIVAHLSRFGKVQGKNVFYWFQNHKARDKQR 72 68**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.637	7	72	IPR001356	Homeobox domain
SMART	SM00389	4.3E-4	9	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-11	9	76	IPR009057	Homeodomain-like
Pfam	PF00046	5.6E-15	10	71	IPR001356	Homeobox domain
CDD	cd00086	0.0017	10	70	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-6	13	71	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MCPAFGNAAR AARWCPTGEQ VMLLEELYKG GLTNPTAAQI HQIVAHLSRF GKVQGKNVFY 60 WFQNHKARDK QRIRRKLIWR EKQQMVELRM NRCWGVVKAM PQPRCDAGDH VPSLVTLDLF 120 PVTPGQLKQV AGEASDQLMI SCNNCPQACY APPWLLASPN LSLGLPGTN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006828230.1	6e-33	WUSCHEL-related homeobox 3
TrEMBL	W1NJL1	1e-31	W1NJL1_AMBTC; Uncharacterized protein
STRING	ERM95646	2e-32	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	2e-30	WOX family protein

Link Out ? help Back to Top
Phytozome	Kalax.1135s0008.1.p