PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1140s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 188aa    MW: 19635.2 Da    PI: 6.2575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1140s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-193888155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr++  +g+WvAeIr+p   + r +r +lg+f t eeAa a++ a+ kl+g
  Kalax.1140s0001.1.p 38 CIYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSEEAATAYDSAAIKLYG 88
                         56*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-143888IPR001471AP2/ERF domain
CDDcd000184.29E-283894No hitNo description
PROSITE profilePS5103222.0493996IPR001471AP2/ERF domain
SMARTSM003801.3E-3439102IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-213995IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-304095IPR001471AP2/ERF domain
PRINTSPR003679.2E-114051IPR001471AP2/ERF domain
PRINTSPR003679.2E-116278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNVDDDNPPT PAAAAKPQTG RSRKGCARGK GGPENASCIY RGVRQRTWGK WVAEIREPNR  60
GARLWLGTFN TSEEAATAYD SAAIKLYGSA AKLNLLTLHQ HEHQNNTNAA TTTTTVGTAS  120
SSSGSNSNSD SISSGNYNNG GFGFGETTTS IGGFLGGGGG GGEESGGEFL YVNEFKDWDG  180
MQVPWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-184095662ATERF1
3gcc_A5e-184095662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389032.22e-44dehydration-responsive element-binding protein 2D
SwissprotP618271e-41DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A498IH694e-43A0A498IH69_MALDO; Uncharacterized protein
STRINGXP_008389032.19e-44(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.15e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]