PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1141s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 222aa    MW: 24318.8 Da    PI: 6.7166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1141s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014668123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Kalax.1141s0001.1.p 46 YTCTFCRREFRSAQALGGHMNVH 68
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-64373No hitNo description
Gene3DG3DSA:3.30.160.609.3E-44471IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1574673IPR007087Zinc finger, C2H2
SMARTSM003550.00664668IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-54669IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
SPLLAPPKYS WTQTGNNDED EESWEVRAFA EDTANGMGTT WPPRSYTCTF CRREFRSAQA  60
LGGHMNVHRR DRARLHQTQN SLTKINSPNP GATTSSSASG GSTLLIPTQE FLVNGGLCLL  120
YQLRNESPNP NDEPSTLLSI SPYPASSYKP SFIATYPQAT YPSSVARTHH SSTISMPLTS  180
LNRIYHKNSM TSEGENSGQH NIGELDLELR LGHGPMSYLD A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134168229superman protein
2l1o_A2e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021293214.11e-61LOW QUALITY PROTEIN: transcriptional regulator SUPERMAN-like
TrEMBLA0A1R3KVN03e-59A0A1R3KVN0_COCAP; Zinc finger, C2H2-like protein
STRINGEOY240172e-57(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-32C2H2 family protein