PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1155s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 275aa MW: 30536.7 Da PI: 9.3086

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1155s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.3e-18	128	182	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+ +++++ +++e LA++l+L rqV vWFqNrRa+ k Kalax.1155s0003.1.p 128 RKKLRLNKHQSALLEDSFKLQSTLNPKQKEALARQLNLRPRQVEVWFQNRRARTK 182 788899***********************************************98 PP
2	HD-ZIP_I/II	118	5.1e-38	128	217	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+eenerL+ke ++L+++ Kalax.1155s0003.1.p 128 RKKLRLNKHQSALLEDSFKLQSTLNPKQKEALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKKCCERLTEENERLHKELKALKQA 217 69*************************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-17	110	185	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.71E-18	116	185	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	124	184	IPR001356	Homeobox domain
SMART	SM00389	4.3E-15	126	188	IPR001356	Homeobox domain
CDD	cd00086	3.13E-14	128	185	No hit	No description
Pfam	PF00046	2.6E-15	128	182	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	159	182	IPR017970	Homeobox, conserved site
SMART	SM00340	4.5E-15	184	228	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	9.4E-10	184	216	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSPPPLPLDH LIISNKDRGG GLFLGLALRT TAAVATTPPA LDLSLSSSSS AHKPNNIISY 60 DQPSLTLSLL LPAKKFDAQS STGDDEISSF SNNSASVKRE REEEPDDQLD ASGANIDLFD 120 DVSNTSSRKK LRLNKHQSAL LEDSFKLQST LNPKQKEALA RQLNLRPRQV EVWFQNRRAR 180 TKLKQTEVDC EVLKKCCERL TEENERLHKE LKALKQASRQ QQPFYMRLPP TMCPSCDTLT 240 DAPSSKNSLP NMLTSSKKRM IFNPFVTKQP SAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	SRKKLRL
2	176	184	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027921850.1	4e-65	homeobox-leucine zipper protein HAT22
Swissprot	P46604	7e-63	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2G9H1F9	7e-64	A0A2G9H1F9_9LAMI; Transcription factor HEX
TrEMBL	A0A4D6L0W2	1e-63	A0A4D6L0W2_VIGUN; Homeobox-leucine zipper protein
STRING	XP_010245638.1	4e-62	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-63	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.1155s0003.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]