PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1183s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 774aa    MW: 84581.3 Da    PI: 6.5475
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1183s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.58.6e-16478516240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C e C+C+dC Nk 
  Kalax.1183s0011.1.p 478 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCYNKP 516
                          689**********************************96 PP
2TCR48.91.3e-15563602140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Kalax.1183s0011.1.p 563 RHKRGCNCKKSSCLKKYCECYQGGVGCSLNCRCESCKNTF 602
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-17477518IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.11478603IPR005172CRC domain
PfamPF036381.5E-11480515IPR005172CRC domain
SMARTSM011146.1E-16563604IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-11565601IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MDTPQKNRIG TPGSKIEESP VFNYLSSLSP IKQVKSIHIS QSFTSLNLTS PSSVFTSPHV  60
VSSFKDSTFL KRHRFADQSR TDDFDEGTKD SSKGEFVGSF QLPENSVKKD FDLEHPVAEV  120
NNNHDEQSEV PKVLPQTLDY DNDTPASESK SRVFINQLDA GSAEASGLLG PFSQGTVRES  180
SDRSDGVPGT FQNTPHTERL RLHWDNLSTD ATDLLVMDSP SETRAFRGLF DKTPNTGENP  240
GSLASLFPDS TNELQLAQPF CQVETVGVEM GQQADPAEHS WLQNLDSPPE SIPCGLEEGT  300
HNNSSDGQLG STSHQGVHRR CLTFETFGGH RESLSSVATR LPSVPLQPEE KGTSRFKQPG  360
PSKPVSAYPL QRVKPGIGLH LNSLAAAKDE NISVPENLPP GVEIRVSSST TPFCPATSQD  420
SLRVPLDTAS YLEDAGPLRM DTQTSEDDSI AIAPSEELNS TSPKKKRPKL THAEDDESCK  480
RCNCKKSKCL KLYCECFAAG VYCIEPCSCQ DCYNKPIHED TVLATRKQIE ARNPLAFAPK  540
VIRAAQAVPD VGDEMANTPA SARHKRGCNC KKSSCLKKYC ECYQGGVGCS LNCRCESCKN  600
TFGRKDGSEV DLEVEVKTEE EEPRPTEKGI GDRQKAVVHI NEEQILDPSF PSTPSRLSRL  660
SVKLQFPSKG KPMRSSFLSI GSSAGSQNET RGVKLSSIPL PPKFEQTIQT AHAEEMPELL  720
QNQGSPRNTV KSNSPNGKRV SPPQCKSRPS PSRRSTRRLI LQAIPSHPSM NQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1648260014120Protein lin-54 homolog
5fd3_B2e-1648260014120Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1462469PKKKRPKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-106TESMIN/TSO1-like CXC 2