PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1183s0011.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 730aa    MW: 79868 Da    PI: 6.3714
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1183s0011.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.68e-16434472240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C e C+C+dC Nk 
  Kalax.1183s0011.2.p 434 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCYNKP 472
                          689**********************************96 PP
2TCR491.2e-15519558140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Kalax.1183s0011.2.p 519 RHKRGCNCKKSSCLKKYCECYQGGVGCSLNCRCESCKNTF 558
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-17433474IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.11434559IPR005172CRC domain
PfamPF036381.4E-11436471IPR005172CRC domain
SMARTSM011146.1E-16519560IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-11521557IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MCVEEQVLAS AWIPRRRTES GLLGRKSRHR FADQSRTDDF DEGTKDSSKG EFVGSFQLPE  60
NSVKKDFDLE HPVAEVNNNH DEQSEVPKVL PQTLDYDNDT PASESKSRVF INQLDAGSAE  120
ASGLLGPFSQ GTVRESSDRS DGVPGTFQNT PHTERLRLHW DNLSTDATDL LVMDSPSETR  180
AFRGLFDKTP NTGENPGSLA SLFPDSTNEL QLAQPFCQVE TVGVEMGQQA DPAEHSWLQN  240
LDSPPESIPC GLEEGTHNNS SDGQLGSTSH QGVHRRCLTF ETFGGHRESL SSVATRLPSV  300
PLQPEEKGTS RFKQPGPSKP VSAYPLQRVK PGIGLHLNSL AAAKDENISV PENLPPGVEI  360
RVSSSTTPFC PATSQDSLRV PLDTASYLED AGPLRMDTQT SEDDSIAIAP SEELNSTSPK  420
KKRPKLTHAE DDESCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCQDCYN KPIHEDTVLA  480
TRKQIEARNP LAFAPKVIRA AQAVPDVGDE MANTPASARH KRGCNCKKSS CLKKYCECYQ  540
GGVGCSLNCR CESCKNTFGR KDGSEVDLEV EVKTEEEEPR PTEKGIGDRQ KAVVHINEEQ  600
ILDPSFPSTP SRLSRLSVKL QFPSKGKPMR SSFLSIGSSA GSQNETRGVK LSSIPLPPKF  660
EQTIQTAHAE EMPELLQNQG SPRNTVKSNS PNGKRVSPPQ CKSRPSPSRR STRRLILQAI  720
PSHPSMNQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1643855614120Protein lin-54 homolog
5fd3_B1e-1643855614120Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418425PKKKRPKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-82TESMIN/TSO1-like CXC 2