PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1198s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 406aa MW: 45860.2 Da PI: 6.7622

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1198s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	135.2	5.8e-42	154	308	4	133
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssa..........sec.eaesss 79 kkdrhski T++g+RdRR+Rls+++a rfF Lqd+LGfdk+skt+eWLl +++ +i + +++ + a sec e++s++ Kalax.1198s0005.1.p 154 KKDRHSKINTAQGPRDRRMRLSLDIAQRFFGLQDMLGFDKASKTVEWLLSKSQSEINKVVRSkksD---AnnvksdsfgaSECcEEVSEV 240 9***********************************************************6550...434444455555666777777 PP TCP 80 ssasnsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +++ s++ k+ k++ k + s++++ ++++ kesr+karararert+ekm+i Kalax.1198s0005.1.p 241 DNKDDLSQSgatdinkenkksssKQGKNNGKVSVSSRKDGFNHHVTKESREKARARARERTKEKMMIC 308 77663333345566666666554555555577777777777899999****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	33.041	154	212	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.4E-44	154	306	IPR005333	Transcription factor, TCP
PROSITE profile	PS51370	12.397	287	304	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MFPAPDGNNS SSSNSFIVPY PDQPFLYSKL FDDIHIDTEY HNPYSPFSFL DQFHAHSPFF 60 NSSDHHEQQP LEIQDSPFVQ HHEEQQPVET TYYQEFTMAA TSNNSASTGG YCTTENFHGN 120 GFPGEPTNGN SSTSASVGPV KQHDAVRKNG ILLKKDRHSK INTAQGPRDR RMRLSLDIAQ 180 RFFGLQDMLG FDKASKTVEW LLSKSQSEIN KVVRSKKSDA NNVKSDSFGA SECCEEVSEV 240 DNKDDLSQSG ATDINKENKK SSSKQGKNNG KVSVSSRKDG FNHHVTKESR EKARARARER 300 TKEKMMICNP QSQTKQQNNN VHNFSNMDQN MLTQVKKQDL LNPEQHTYSY VDQGHMMTDQ 360 DESLANMYTT YWNPSSATVF NHLQQQNNGT SQQLQVGDIQ FYARP*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MFPAPDGNNS SSSNSFIVPY PDQPFLYSKL FDDIHIDTEY HNPYSPFSFL DQFHAHSPFF  60
NSSDHHEQQP LEIQDSPFVQ HHEEQQPVET TYYQEFTMAA TSNNSASTGG YCTTENFHGN  120
GFPGEPTNGN SSTSASVGPV KQHDAVRKNG ILLKKDRHSK INTAQGPRDR RMRLSLDIAQ  180
RFFGLQDMLG FDKASKTVEW LLSKSQSEIN KVVRSKKSDA NNVKSDSFGA SECCEEVSEV  240
DNKDDLSQSG ATDINKENKK SSSKQGKNNG KVSVSSRKDG FNHHVTKESR EKARARARER  300
TKEKMMICNP QSQTKQQNNN VHNFSNMDQN MLTQVKKQDL LNPEQHTYSY VDQGHMMTDQ  360
DESLANMYTT YWNPSSATVF NHLQQQNNGT SQQLQVGDIQ FYARP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-25	TCP domain protein 12

Link Out ? help Back to Top
Phytozome	Kalax.1198s0005.1.p