PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1227s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 378aa    MW: 42564.4 Da    PI: 8.7203
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1227s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP137.61e-421263083133
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          gk drhski+T++g RdRR+Rls+++a++fFdLqd LGfdk+sktieWL++++k aike +g+                           
  Kalax.1227s0004.1.p 126 GKNDRHSKICTAQGFRDRRMRLSVQIARKFFDLQDALGFDKASKTIEWLFNKSKNAIKEVMGStyhsrvmdgpqrsnnvgtfdcidnptg 215
                          799************************************************************999999999888888888888888888 PP

                  TCP  66 .........................ssssa..seceaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertre 128
                                                      +   + c++++ +++ ++ +++ +++s++ + +++++ ++  + +k+ r kar rarert e
  Kalax.1227s0004.1.p 216 gygqedlassslvrnedayslnlkqI--ATnqKICKDKDGRNKLKSVNKQLKSTSKKLKGNNNNQISQCPQHKKDVRDKARVRARERTLE 303
                          77777766666666665555555321..221123455555555555555566666665556666666678888899************** PP

                  TCP 129 kmrik 133
                          kmr++
  Kalax.1227s0004.1.p 304 KMRLR 308
                          **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.14127185IPR017887Transcription factor TCP subgroup
PfamPF036343.3E-41127306IPR005333Transcription factor, TCP
PROSITE profilePS513709.308287304IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MFSSSNSNGD SDCFRPYNSS MSPSSFPLAS SSSPALLEED QFFVDHLLFM SQGQQQFFLG  60
HESEPHQLAL VDHQDFVDGM TVAGEFEEEV TPAQESKKKN RVGSSNDKNK NDCRPAKRPN  120
KRIRIGKNDR HSKICTAQGF RDRRMRLSVQ IARKFFDLQD ALGFDKASKT IEWLFNKSKN  180
AIKEVMGSTY HSRVMDGPQR SNNVGTFDCI DNPTGGYGQE DLASSSLVRN EDAYSLNLKQ  240
IATNQKICKD KDGRNKLKSV NKQLKSTSKK LKGNNNNQIS QCPQHKKDVR DKARVRARER  300
TLEKMRLRVI EDPNQRPFAA AANPHNLTCS EQIGSCSPFE QVDAISGAQS QSVEELIHAD  360
WDIDSARFYT SYIFDTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-28TCP domain protein 12