PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1230s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 312aa    MW: 34178.7 Da    PI: 6.4995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1230s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.44e-06176220655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +++ r+RR++i ++ +eL +l+P         +++ ae+ + A  Y+k Lq
  Kalax.1230s0009.1.p 176 SIAARQRRRKIADKTQELGKLIPGgH------RMNTAEMFQSASMYVKFLQ 220
                          6788*******************954......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.509170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-9173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-6173224No hitNo description
Gene3DG3DSA:4.10.280.102.8E-9174227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-6176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGLSCYMSNR SAADYVLQQE QLLLELGCFQ DDFPLAHTSV DALFYPPPQK HPSFISQPPQ  60
LQTTHYGNFS SQLLPCVQQK SCHPKRQKIA PWPHPNPQSD THFNYDSMLA CGTVPFVDGC  120
WSSAADDAQL LLPLAQEFQG GDQSWLQDDF PAEAFPCGAT ADRPGGGGGG GLSAQSIAAR  180
QRRRKIADKT QELGKLIPGG HRMNTAEMFQ SASMYVKFLQ AQIAMLTLTD SLQVTLNSNL  240
GAVSSESADE GRQQIQVLVA SPVVQEKLYT QEKCLVPRRL VQSLPRDSKL QSLHPSLIKQ  300
INNLLQTPQA E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-24bHLH family protein