PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1234s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 350aa    MW: 39256.3 Da    PI: 7.8906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1234s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21.1e-55141401129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++k+++ ++ +  +i e+d++k+ePw+Lp+k+k +e+ewyfF+ rdkky+tg r+nrat++gyWkatgkdk
  Kalax.1234s0006.1.p  14 LPPGFRFHPTDEELITHYLCNKIADASFAA-VAIGEADLNKCEPWHLPEKAKMGENEWYFFCLRDKKYPTGLRTNRATEAGYWKATGKDK 102
                          79*************************999.67***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +++l+g+kktLvfy+grapkgek++Wvmhe+rle
  Kalax.1234s0006.1.p 103 EIFR-GKSLIGMKKTLVFYRGRAPKGEKSNWVMHEFRLE 140
                          ****.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-626164IPR003441NAC domain
PROSITE profilePS5100556.72214164IPR003441NAC domain
PfamPF023659.5E-2915139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDQNMYKSDQ PIDLPPGFRF HPTDEELITH YLCNKIADAS FAAVAIGEAD LNKCEPWHLP  60
EKAKMGENEW YFFCLRDKKY PTGLRTNRAT EAGYWKATGK DKEIFRGKSL IGMKKTLVFY  120
RGRAPKGEKS NWVMHEFRLE GKLSLHNLPH TAKTEWVISR VFEKSCSGRK MHVPGVPSLS  180
SFDDFMTLNL NPQLPPLMDF SQIDTKFKPI PPPNVPCFSS QAAFHRPPQS DFVTITSSFN  240
TNNNSQLSAI SRNQPGPFAQ LGHPNPNPIF IPTSYVPGQD EAVARGYLDS INSNHGWPST  300
HLFQSGRETA AVRASQETGL TYEVNETRRP FEDGSASGVG PVDPCVWLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-521217015171NO APICAL MERISTEM PROTEIN
1ut4_B9e-521217015171NO APICAL MERISTEM PROTEIN
1ut7_A9e-521217015171NO APICAL MERISTEM PROTEIN
1ut7_B9e-521217015171NO APICAL MERISTEM PROTEIN
3swm_A9e-521217018174NAC domain-containing protein 19
3swm_B9e-521217018174NAC domain-containing protein 19
3swm_C9e-521217018174NAC domain-containing protein 19
3swm_D9e-521217018174NAC domain-containing protein 19
3swp_A9e-521217018174NAC domain-containing protein 19
3swp_B9e-521217018174NAC domain-containing protein 19
3swp_C9e-521217018174NAC domain-containing protein 19
3swp_D9e-521217018174NAC domain-containing protein 19
4dul_A9e-521217015171NAC domain-containing protein 19
4dul_B9e-521217015171NAC domain-containing protein 19
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216531.11e-114PREDICTED: NAC domain-containing protein 100-like
RefseqXP_018808641.11e-114PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLR31e-101NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A200QP081e-112A0A200QP08_9MAGN; NAC domain
STRINGAquca_002_00662.11e-113(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-103NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]