PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1242s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 215aa    MW: 24889.7 Da    PI: 9.681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1242s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604.1e-1932118799
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          + ++++s+ l +pkkfa ++ +k   + t++l+ ++g  W+vk+   k+++ ++ltkGW +Fv ++ L+e D +vF+ +g+s+f   v++
  Kalax.1242s0001.1.p  32 QIMANSSSELKVPKKFAMKFPMK--LGETIKLRGPTGDIWRVKV--VKTDEDVLLTKGWPRFVYDHLLNEYDLLVFRCTGSSSF--DVSI 115
                          4557778889*******999877..7779***************..*******************************9998999..9999 PP

                          E-S CS
                   B3  97 frk 99 
                          f++
  Kalax.1242s0001.1.p 116 FDR 118
                          998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-2522121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2423121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.52126119IPR003340B3 DNA binding domain
CDDcd100176.18E-1728117No hitNo description
SMARTSM010198.7E-1430119IPR003340B3 DNA binding domain
PfamPF023627.9E-1632118IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-8134196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-7134196IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.188135214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAQMDEREET SRVMEEQIYW NQFESTKHHF FQIMANSSSE LKVPKKFAMK FPMKLGETIK  60
LRGPTGDIWR VKVVKTDEDV LLTKGWPRFV YDHLLNEYDL LVFRCTGSSS FDVSIFDRNA  120
CVKDLRMLQD RFESKPHFFK VMNQEFRSKL LIPKKLSIGF VEKMGNTIRL KGPSGNVWEV  180
GAERAGEDVI LRRGCEKESS HFVKPAARST DLRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-17B3 family protein