PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1263s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 446aa    MW: 49178.6 Da    PI: 5.5844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1263s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-053323691254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Kalax.1263s0006.1.p 332 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 369
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.189320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.33E-6330374No hitNo description
SuperFamilySSF474591.44E-11330384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-9334377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MASSEDFETA GICRGGWWNP GRSLFPPCAA PLSDFMWASS VLNGTVEEEQ AEMKQAAADA  60
TYSRSDESDD RRSSSAEHLM SSDYTHIFQD VGQKQPHQMA DFVLSDWSQN SLLHDYSPNM  120
SIFKPVVDDQ KNNDRSSHGL YNLDPKVSQL GLLQENIDAS SYAYTSMVQA LMGPDHTDMS  180
YGFGSSFVAS STSFMQQQQE AAAASNWPKS MISPSPKQQL NGGAKRGNIF APFWDDSWMG  240
SDEIRTPESS HPLLVPALFE DHKPNNSASN SFNGRSSSTT PPKPDTKDNI LPHKLADFTL  300
LGSKRKINPS GGEPYKRPRI ETPSSLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  360
EAIEYIKFLH DQVSVLRTPY MQNGTPTNQH QQMQGEAKNA ADEGPKQDLR SRGLCLVPIS  420
STFPVANETT ADFWTPTFGG TMTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.33e-56bHLH family protein