PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1298s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 94aa    MW: 10628.3 Da    PI: 10.2003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1298s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd +lv +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Kalax.1298s0001.1.p 19 KGAWSVEEDIKLVAYVTKYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 66
                         79******************99*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.7571470IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-211569IPR009057Homeodomain-like
SMARTSM007178.8E-91868IPR001005SANT/Myb domain
PfamPF002495.4E-141966IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-212093IPR009057Homeodomain-like
CDDcd001675.23E-82166No hitNo description
PROSITE profilePS500904.7166793IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-87093IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MGRRPATATA AAIDSGLRKG AWSVEEDIKL VAYVTKYGCW NWRQLPKFAG LARCGKSCRL  60
RWLNYLKPDL KRGNYTKEEE DTIIRLHESV GNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-15129320100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901070.18e-46transcription factor MYB4-like
SwissprotQ9SBF38e-35MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1R3JCN64e-44A0A1R3JCN6_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_34.623e-45(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.13e-37myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]