PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1302s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 335aa    MW: 36601.4 Da    PI: 9.1457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1302s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.5e-15162207555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Kalax.1302s0001.1.p 162 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 207
                          9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-19155219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.727157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.48E-16162210No hitNo description
Gene3DG3DSA:4.10.280.105.7E-18162216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-13162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-17163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVMDALVPLC SNNNNNNCNC NHNNNNGNNP DEDSNAGGTV GRTHVGSCSA GMKRTRQGVR  60
QVPVVGQDWS ARSEYSANSS RQQRVTVDTC TERDQGTTAF TSTSVWSAEN TSSGMPCTRL  120
TGDDHDSICH SRSIMKNERG SGENKKQKAS NTAKRSRAAD IHNQSERKRR DKINQRMKTL  180
QKLVPNSNKT DKASMLDEVI DYLKQLQAQV NMMNRMNMPQ MAMMPMALNQ QAALQMTMMA  240
QMGMGGMLDM NAAAAMAAGR ANMQPILHPS AAPAAFMPMP PASWDAAAQA MMSDPMSAFL  300
ACQQSQPMTM DAYRMMASLY QHMQQAQQAP NSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRD
2166171RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017451.16e-83PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-64UNE10_ARATH; Transcription factor UNE10
TrEMBLU5GLG25e-80U5GLG2_POPTR; BHLH family protein
STRINGPOPTR_0002s14430.18e-81(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]