PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1309s0006.6.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 929aa    MW: 102788 Da    PI: 6.4756
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1309s0006.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23127228199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Kalax.1309s0006.6.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Kalax.1309s0006.6.p 215 --WNDKNQLLLGIRRA 228
                          ..7888889****997 PP
2Auxin_resp1102.5e-36253334183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaast+s F+++YnP+  +seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sd+dpvrWpnS+Wrs+k
  Kalax.1309s0006.6.p 253 AAHAASTNSRFNIFYNPS--PSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDSDPVRWPNSHWRSVK 334
                          79***************7..7**************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-48113256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-21126227No hitNo description
PfamPF023625.1E-22127228IPR003340B3 DNA binding domain
SMARTSM010193.9E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52127229IPR003340B3 DNA binding domain
PfamPF065072.0E-31253334IPR010525Auxin response factor
PfamPF023096.9E-8787884IPR033389AUX/IAA domain
SuperFamilySSF542776.54E-7789870No hitNo description
PROSITE profilePS5174524.319795879IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MRLSSAGFSP QPQEGEKRVL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDP YLPADFGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAK DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAASTN SRFNIFYNPS PSEFVIPLTK YVKAVYHTRV SVGMRFRMLF  300
ETEESSVRRY MGTITGISDS DPVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF  360
PMYPSPFPFR LKRPWPAGLP SLNGFKEEDL GMNSPLMWLR GDNGQTLNFQ GMGANPWMQM  420
QPRMDAMLGL QSDMYQAMAA AAFQEMRAVD PTKQTPPPNL LQFQQPQSVG NAPACLIPPQ  480
MLNQAQAQLS YLQSLQESQA QAQAQMIAQS QARSQSQSHS HSQSHSVQTS LIQGQLQHQS  540
SFNSHQGQQD QRQPQRQQMQ SIDPQRMPNM VSNIPQYVSN AQSQSPAMQP VSSLCQQQSF  600
TGSDGNLVSV SSPIVSPLQS LLGSYTTDES PHLFSLPRNA VPVVSSSDWP SKRVALERDP  660
HPHLPSPGSQ ALLSQLEQQL GESQVNMLHN NVTLPPFPGR ECSIDQVGST DPQSHVLFGV  720
NLDPTSLLLQ NGISNLRGVG GDCESSSMPF ASSSFMSNSG SDFTLNPTMT PSSCIDESGF  780
LQSPENVTEA NALNKTFVKV YKSGSFGRSL DMAKFSSYQE LRSELARMFG LDGQLEDPKR  840
SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSPQEV QQMGKRGLEL LNSVPIQRLS  900
SNGCEEYSSR QESRNLSSGI TAVGSLEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561335543388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640724.10.0auxin response factor 6-like isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2C9UGD00.0A0A2C9UGD0_MANES; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]