PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1326s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YA
Protein Properties Length: 128aa    MW: 14261 Da    PI: 10.1338
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1326s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.33e-2950106158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RRq R k+e+e+kl +ksrk+ylheSRh hAlrR+Rg+ G F
  Kalax.1326s0008.1.p  50 EEPVFVNAKQYHGILRRRQPRGKAESENKL-AKSRKQYLHESRHPHALRRARGCAGCF 106
                          69****************************.***********************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-3148109IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.23749109IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.7E-2551106IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.6E-205274IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.6E-2083106IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
HNPYYRSIFT SHEAPPYSAQ PYSPQPMVCP HAAYVGIQQA GLPLPSDVVE EPVFVNAKQY  60
HGILRRRQPR GKAESENKLA KSRKQYLHES RHPHALRRAR GCAGCFLNAK KNENNQKNES  120
TSGGSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-1949114166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903689.12e-56nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_021903693.12e-56nuclear transcription factor Y subunit A-7-like isoform X3
RefseqXP_021903694.12e-56nuclear transcription factor Y subunit A-7-like isoform X3
RefseqXP_021903695.12e-56nuclear transcription factor Y subunit A-7-like isoform X3
SwissprotQ84JP12e-44NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLB9SB332e-54B9SB33_RICCO; Nuclear transcription factor Y subunit A-4, putative
STRINGevm.model.supercontig_20.452e-56(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.18e-39nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]