PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1348s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 139aa    MW: 16033.5 Da    PI: 9.7828
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1348s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF275.6e-091150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i n++ r + f kRr  ++ K +E+SvL +  ++ +i+s+
  Kalax.1348s0001.1.p 11 IPNYTARRTAFRKRRDSLIRKLNEISVLAGGAACGVILSP 50
                         789***************************9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-9161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.736149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-16180IPR002100Transcription factor, MADS-box
CDDcd002669.65E-19283No hitNo description
PRINTSPR004041.7E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-71150IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MTRKKVQLAW IPNYTARRTA FRKRRDSLIR KLNEISVLAG GAACGVILSP FEGDPPLFWP  60
PSINEVLERF FSLRELEQQK RLVTVESYIN DEVSKLKQII QKEHKVIREA EVSYLMNSIH  120
FHGSPIATLR YDETSDLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVQLAWIPNYTARRTAFRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-25M-type_MADS family protein