PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1348s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 219aa MW: 25218.6 Da PI: 6.679

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1348s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.3	2.3e-09	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r tf kRr ++ K +E+SvL++ ++ +i+s+ Kalax.1348s0003.1.p 11 IPNYTARRATFRKRRDSLIRKLNEISVLTGGAACGVILSP 50 789******************************9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.717	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.1E-11	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-16	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.74E-21	2	83	No hit	No description
PRINTS	PR00404	3.5E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.7E-9	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MTRKKIQLAW IPNYTARRAT FRKRRDSLIR KLNEISVLTG GAACGVILSP FEGDPPVFYP 60 QAINEIIDRF FSLPEFEQQK RLVTAESYIH DEISKLQEII QKEHKMIREA EVSYRMNSIH 120 FHGSHIATLS YDETSDLFWY FEEMKNKCEL RLNQLDPNAS APHPLHPETM MMQEPQMGMN 180 DPIWLSAGNP VNASFPHPPP PFESHHQAAG FYNNNTGY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKIQLAWIPNYTARRATFRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	2e-24	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Kalax.1348s0003.1.p