PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1366s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-other
Protein Properties Length: 482aa    MW: 51882.9 Da    PI: 5.5314
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1366s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.32e-061375656
                         S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                         +ft++++ e+e++ ++  n+ p +e    LA+k            ++ +qV +WFqN+R+  k
  Kalax.1366s0004.1.p 13 RFTPSEVAEMEAVLQQhnNNLPPRELFVTLAEKFsngpdrvgkiVVQMKQVWNWFQNKRYALK 75
                         699**********99765888999999**************99999*************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-11479IPR009057Homeodomain-like
SMARTSM003890.0018781IPR001356Homeobox domain
PROSITE profilePS500719.3131377IPR001356Homeobox domain
CDDcd000861.73E-41375No hitNo description
Gene3DG3DSA:1.10.10.601.9E-71381IPR009057Homeodomain-like
PfamPF167192.4E-36136263IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MGRPPGNGGP AFRFTPSEVA EMEAVLQQHN NNLPPRELFV TLAEKFSNGP DRVGKIVVQM  60
KQVWNWFQNK RYALKAKSNK APAKFDAAPL QAVPPLPAAL APALHTIPPV RQEVDGSPSS  120
NMARSLAPHS GKASINMEFE ARSARDGAWY DVAAFLSVRN KDTDDPEVLV RFVGLTPEED  180
EWIKVSKHVR HRSLPCEASE CVAVLPGDLI LCFQEAPDQA LYFDAHVLDA QRMKHDSRGC  240
RCRFLVRYDH DQFEEIVPLR KICRRPETDY RLQIYQTLRD LPTQEKKIDE SSACSVPLAN  300
NSLAESVQMP EKVDDNTVAA SSAAANQPDR ATVPSSPFAH EKSKGSPEEG NPGNAAGGNA  360
SKGTRKAEEN LEKDDAVTKR PRKSDPAENP VGQDASTPPT VPESDKQDEI QGLAVSAAAE  420
KGSSHAVAEE KEAGPTVSKD GAAVEAGNPN PTGVALTCQN QTNGGSSGGS SDVPVGAQQC  480
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-431342671134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-431342671134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-431342671134SHH1 SAWADEE
4iur_B1e-431342671134SHH1 SAWADEE
4iut_A1e-431342671134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-431342671134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-431342671134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-431342671134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-431342671134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-431342671134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574201.11e-134protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-121SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A061FF911e-131A0A061FF91_THECC; DNA binding protein, putative
TrEMBLA0A2P2JYD81e-131A0A2P2JYD8_RHIMU; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
STRINGEOY131341e-132(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-122sequence-specific DNA binding transcription factors;sequence-specific DNA binding