PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1396s0003.6.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 559aa    MW: 63021.9 Da    PI: 5.1252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1396s0003.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-13332376655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           e+ErrRR+++N+++ +Lr l+P  +      Kl+Ka+iL  A++Y+k+L+
  Kalax.1396s0003.6.p 332 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYMKQLK 376
                          589*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-1417188IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.11E-15324380No hitNo description
PROSITE profilePS5088816.888326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17327388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-11331375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15333388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.048440518IPR002912ACT domain
CDDcd021160.00686441498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MKQSQVGARR SMLNFMDRLR PLVGSKGWDY CAVWRLSQDQ RFLELMGCCC AGADDEQDKL  60
KFLVWPQLPC QDTVFQHQRT ECCDHLCHLP SSVPLNSEFD LISSNLFDSS KIRFQILTRV  120
LFFCSIYAEA FFSSQPRWLN VNLNTFSDPQ AMAKELVGTQ VLIPVLGGLV ELFVAKQVAE  180
DKSVVDFIAA QCAIPLELDA LLTSSLQTRT NPAEENPQPD AERSHASPSS SYQFHQPEAN  240
NTNQQACEMS SPKDFSQQFN CDSAAENEPP NNYAMMMSGG SGSASDMPSQ SKDGVRLEAG  300
RSDYTSDCSD QIDDEDEAKC RRRNGKCQSK NLEAERRRRK KLNERLYKLR ALVPIISKLD  360
KASILVDAID YMKQLKKQVE ELRKELEQES DNKGDQTPAE SVSEFVAPNN RNVANPLGHE  420
KVQQMEPQVE VTPVDGSKFF IRVFCEQKPG GFVRLLEALS SLGLEVTNVN VTNYRMLVSN  480
VFQVEMTRDD IDDHHVAADD LRKSLLELTQ IPVEAPWPDP LPDTTSDMPE YGVRADNHFP  540
HHHALLNHHT SPYHLHHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320340RRRNGKCQSKNLEAERRRRKK
2334341ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-81bHLH family protein