PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1404s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 202aa    MW: 23298.7 Da    PI: 6.8122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1404s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.7e-101157347
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                         +WT  Ed+l+ ++  +++     +W++Ia++++  ++ +q+++++  +
  Kalax.1404s0005.1.p 11 SWTRSEDKLFEQLLVKYPEAepeRWEKIASRLQ-FKSTEQVRDHYEEL 57
                         7*****************88*************.99*********766 PP
2Myb_DNA-binding44.63.2e-14111155347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Kalax.1404s0005.1.p 111 PWTEEEHRLFLIGLQKYGKGDWRSISRQVVITRTPTQVASHAQKY 155
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.716462IPR017930Myb domain
SMARTSM007171.9E-11860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-7859IPR009057Homeodomain-like
SuperFamilySSF466891.0E-111065IPR009057Homeodomain-like
PfamPF002493.7E-91157IPR001005SANT/Myb domain
CDDcd001679.89E-71658No hitNo description
PROSITE profilePS5129420.555104160IPR017930Myb domain
SuperFamilySSF466892.14E-17106161IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17107159IPR006447Myb domain, plants
SMARTSM007172.5E-11108158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-12108154IPR009057Homeodomain-like
CDDcd001675.03E-9111156No hitNo description
PfamPF002497.4E-13111155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MFPSPSSTSS SWTRSEDKLF EQLLVKYPEA EPERWEKIAS RLQFKSTEQV RDHYEELLHD  60
VSQIDAGRIE LPSYVDDVVD EEDGSWDSDS KRISFGRKSG KSDAERKKGT PWTEEEHRLF  120
LIGLQKYGKG DWRSISRQVV ITRTPTQVAS HAQKYFLRQN SVKKERKRSS IHDITTVDKQ  180
QRNDIVGEDT SFGYHNFGVN G*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212063.15e-80transcription factor SRM1
SwissprotQ9FNN61e-56SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A151TQ521e-78A0A151TQ52_CAJCA; Myb-like protein J
TrEMBLA0A2H5PNP11e-77A0A2H5PNP1_CITUN; Uncharacterized protein
TrEMBLV4U9T91e-77V4U9T9_9ROSI; Uncharacterized protein
STRINGXP_006485458.16e-79(Citrus sinensis)
STRINGXP_010423540.15e-79(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-72MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]