PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1411s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 354aa    MW: 40279.1 Da    PI: 7.0281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1411s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.43.6e-2937753128
                  NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ ewyf+s  dkky +g r nrat++gyWkatg+d++v++ ++++vg+kktLvf+kgrap g++tdWvmhey l
  Kalax.1411s0004.1.p   3 SRDLEWYFYSALDKKYGNGARMNRATSKGYWKATGNDRSVKH-ESRTVGMKKTLVFHKGRAPGGKRTDWVMHEYWL 77 
                          45679*************************************.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.3141120IPR003441NAC domain
SuperFamilySSF1019416.54E-333120IPR003441NAC domain
PfamPF023651.5E-12876IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRSRDLEWYF YSALDKKYGN GARMNRATSK GYWKATGNDR SVKHESRTVG MKKTLVFHKG  60
RAPGGKRTDW VMHEYWLVDK ELERLGIVKE HDSKTMLLCW PLLLFWGRKD GFVLCRVFQK  120
SGLGPPNGDQ YAPFDESQWD DNQLVLVPVS ETGDEGLVSD ETEPRDSSSL EGNNQDEKHQ  180
ETQPEKTEIT YGRGTFLALL RANRPRHFGS DPSRTKSSSS SSSSSSSLPL DPSLSIKTAV  240
TMADAAAMAA RTLLEFPKES PQPSRFDIAS FDIPVHPSYL DLINNRDPHD RDKFRIEMMH  300
AQAMIDVLQS RINFLLQENE ELKNYSYRAG SDRMVRESDQ VPVQFMYSYR SAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-24712072165NO APICAL MERISTEM PROTEIN
1ut4_B9e-24712072165NO APICAL MERISTEM PROTEIN
1ut7_A9e-24712072165NO APICAL MERISTEM PROTEIN
1ut7_B9e-24712072165NO APICAL MERISTEM PROTEIN
3swm_A8e-24712075168NAC domain-containing protein 19
3swm_B8e-24712075168NAC domain-containing protein 19
3swm_C8e-24712075168NAC domain-containing protein 19
3swm_D8e-24712075168NAC domain-containing protein 19
3swp_A8e-24712075168NAC domain-containing protein 19
3swp_B8e-24712075168NAC domain-containing protein 19
3swp_C8e-24712075168NAC domain-containing protein 19
3swp_D8e-24712075168NAC domain-containing protein 19
4dul_A9e-24712072165NAC domain-containing protein 19
4dul_B9e-24712072165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-53NAC domain containing protein 52