PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1431s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 193aa    MW: 20798.4 Da    PI: 6.0633
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1431s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.6e-07447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ ++  e++  C  ++  lC+ C ++ H        H++vpl
  Kalax.1431s0004.1.p  4 QCDSCGLAEAEVLCCADEAVLCAVCDEAVHTAnklsskHQRVPL 47
                         7******99*********************65889999999986 PP
2zf-B_box29.71.3e-0959100439
             zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                          + C+ ++e +  +fC +++ llC++C + +H+       H++
  Kalax.1431s0004.1.p  59 PPCDICQERRGYIFCLEDRALLCRNCDVGTHNAnaytwaHRR 100
                          67*****************************76888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.007147IPR000315B-box-type zinc finger
CDDcd000211.13E-6347No hitNo description
SMARTSM003369.1E-12447IPR000315B-box-type zinc finger
SMARTSM003367.5E-1156103IPR000315B-box-type zinc finger
CDDcd000211.30E-55989No hitNo description
PfamPF006431.4E-759100IPR000315B-box-type zinc finger
PROSITE profilePS501198.87361103IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKIQCDSCGL AEAEVLCCAD EAVLCAVCDE AVHTANKLSS KHQRVPLLKR PPSTAACSPP  60
CDICQERRGY IFCLEDRALL CRNCDVGTHN ANAYTWAHRR LLITGVQVAL QSFSSAKHVG  120
KMECLSSWPS SSASPSGPGH RQEEQVLQGN GEMEMELAAS SSDTTAGFPS QQTHTAATGF  180
MDQWPAVQDI HY*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071822.11e-58PREDICTED: B-box zinc finger protein 23
SwissprotQ9SYM27e-42BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A438HGR52e-57A0A438HGR5_VITVI; B-box zinc finger protein 22
TrEMBLA5BZK62e-57A5BZK6_VITVI; Uncharacterized protein
STRINGVIT_18s0089g01280.t014e-58(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-44light-regulated zinc finger protein 1